Generate Config File for PALS
General Settings
Identifier
File path to image (nifti)
File path to mask (nifti)
Output directory
Script Run
all
bet
mnired
coreg
pals
skipdone
Starting Space
orig
mni
Results Output Format
csv
json
Path Configuration
ANTs Binaries Folder Path
FSL Binaries Folder Path
ROIs Folder Path
Template Folder Path
Configuration for Registration
Registration Method
flirt
Cost Function
Partial Mask Weighting
No Mask Weighting
Configuration for Brain Extraction
BET Vertical Gradient
Configuration for QC
GIF Duration
Click here to download the config file